Complete list of talks and publications
Bo Li, Guangming Fu. (2008) Environmental biotechnology. in Rongqian Li, editor: Introduction of Bioengineering, 2nd. Wuhan: Central China Normal University press, pp.159-171. (Be invited to write a book chapter).
Yinxiang Peng, Bo Li, Hongxing Chen. (2007) Gene Engineering (in Chinese). Wuhan: HUST Press.
Bo Li. (2006) Bioreactor. in Fangyi Huang & Bin Ye, editors: Fermentation Engineering, 2nd ed. Wuhan: Central China Normal University press, pp.37-55. (Be invited to write a book chapter).
2022
Yin, H., Chen, Y., Xiong, Y., Tao, J., Yang, H., Li, B. & Li, S. Robust biomarkers for early diagnosis of germinoma revealed by multi-omics and machine learning approaches. Neuro-Oncology (2022) (IF=12.300, 2nd revision, Corresponding author).
Yang, Q., Li, B., Wang, P. & Zhu, F. mmeaseR: an R package for Data Integration, Marker Identification, Metabolite Annotation and Enrichment in Large-scale and Long-term Metabolomics. Briefings in Bioinformatics (2022) (IF=13.994, 2nd revision).
Yin, H., Tao, J., Peng, Y., Xiong, Y., Li, B., Li, S. & Yang, H. MSPJ: discovering the potential biomarkers in small gene expression dataset via ensemble learning. Computational and Structural Biotechnology Journal 20: 3783-3795 (2022) (IF=7.271, Corresponding author)
Yang, Q., Li, Y., Li, B. & Gong, Y. A Novel Multi-class Classification Model for Schizophrenia, Bipolar Disorder and Healthy Subjects Using Comprehensive Transcriptomic Data. Computers in Biology and Medicine 148: 105956 (2022) (IF=4.589).
Tian, L., Long, F., Hao, Y., Li, B., Li, Y., Tang, Y., Li, J., Zhao, Q., Chen, J. & Liu, M. A cancer associated fibroblasts-related six-gene panel for anti-PD-1 therapy in melanoma driven by weighted correlation network analysis and supervised machine learning. Frontiers in Medicine 9: 880326 (2022) (IF=5.091).
Qin, D., Bo, W., Zheng, X., Hao, Y., Li, B. & Liang, G. DFBP: a comprehensive database of food-derived bioactive peptides. Bioinformatics 10.1093/bioinformatics/btac323 (2022) (IF=6.937, Corresponding author).
李勃, 何昊, 张晓曦, 李映红 & 杨丹. 立足方法学基点 培育生物信息学素养. 生物学杂志 39(1): 127-130 (2022) (CSCD, 第一作者).
2021
李勃 & 朵泓睿. 单细胞RNA测序数据分析方法研究进展. 重庆师范大学学报(自然科学版) 38(05): 129-135+142 (2021) (CSCD, 第一作者).
Yin, H., Zheng, X., Tang, X., Zang, Z., Li, B., He, S., Shen, R., Yang, H. & Li, S. Potential biomarkers and lncRNA-mRNA regulatory networks in invasive growth hormone-secreting pituitary adenomas. Journal of endocrinological investigation 44(9): 1947-1959 (2021) (IF=4.256).
Yang, Q., Li, B., Chen, S., Tang, J., Li, Y., Li, Y., Zhang, S., Shi, C., Zhang, Y., Mou, M., Xue, W. & Zhu, F. MMEASE: Online meta-analysis of metabolomic data by enhanced metabolite annotation, marker selection and enrichment analysis. Journal of proteomics 232: 104023 (2021) (IF=4.044, Co-first author).
Bo, W., Chen, L., Qin, D., Geng, S., Li, J., Mei, H., Li, B. & Liang, G. Application of quantitative structure-activity relationship to food-derived peptides: Methods, situations, challenges and prospects. Trends in Food Science & Technology 114: 176-188 (2021) (IF=12.563, Corresponding author).
Wang, X., Chai, Z., Pan, G., Hao, Y., Li, B., Ye, T., Li, Y., Long, F., Xia, L. & Liu, M. ExoBCD: a comprehensive database for exosomal biomarker discovery in breast cancer. Briefings in bioinformatics 22(3): bbaa088 (2021) (IF=13.994).
Wang, P., Xu, X., Li, Y., Li, B., Pei, Q., Yu, P., Jing, C. & Lu, M. Discovery of Novel Mammalian target of rapamycin (mTOR) Inhibitors by Support Vector Machine. IOP Conference Series: Earth and Environmental Science 692(3): 032028 (2021).
2020
刘杰, 李勃, 陈晓洁 & 陈斌. 埃及伊蚊不同组织的基因共表达模式分析. 昆虫学报 63(10): 1171-1182 (2020).
刘杰, 李勃 & 陈斌. 中华按蚊雌、雄蚊转录组比较分析. 重庆师范大学学报(自然科学版) 37(03): 54-59 (2020).
李勃, 陶靖心 & 魏晋艺. 短学时情况下生物信息学课程教学改革——以重庆师范大学为例. 西部素质教育 6(05): 183-184 (2020) (第一作者).
李勃, 方斌, 陶靖心 & 刘明伟. 秀丽隐杆线虫基因组编码区的碱基分布特征参数研究. 重庆师范大学学报(自然科学版) 37(03): 14-20 (2020) (CSCD, 第一作者).
Yang, Q., Li, B., Tang, J., Cui, X., Wang, Y., Li, X., Hu, J., Chen, Y., Xue, W., Lou, Y., Qiu, Y. & Zhu, F. Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data. Briefings in bioinformatics 21(3): 1058-1068 (2020) (IF=13.994).
Wei, J., Lu, H., Tao, J., Hao, Y., Huang, D. & Li, B. The complete mitogenome of Lasioglossum affine (Hymenoptera: Halictidae) and phylogenetic analysis. Mitochondrial DNA. Part B, Resources 5(3): 3784-3785 (2020) (IF=0.658, Corresponding author).
Wang, X., Chai, Z., Li, Y., Long, F., Hao, Y., Pan, G., Liu, M. & Li, B. Identification of Potential Biomarkers for Anti-PD-1 Therapy in Melanoma by Weighted Correlation Network Analysis. Genes 11(4) (2020) (IF=4.096, Corresponding author).
Tao, J., Hao, Y., Li, X., Yin, H., Nie, X., Zhang, J., Xu, B., Chen, Q. & Li, B. Systematic Identification of Housekeeping Genes Possibly Used as References in Caenorhabditis elegans by Large-Scale Data Integration. Cells 9(3) (2020) (IF=7.666, Corresponding author).
Tang, J., Wang, Y., Fu, J., Zhou, Y., Luo, Y., Zhang, Y., Li, B., Yang, Q., Xue, W., Lou, Y., Qiu, Y. & Zhu, F. A critical assessment of the feature selection methods used for biomarker discovery in current metaproteomics studies. Briefings in bioinformatics 21(4): 1378-1390 (2020) (IF=13.994).
Tang, J., Fu, J., Wang, Y., Li, B., Li, Y., Yang, Q., Cui, X., Hong, J., Li, X., Chen, Y., Xue, W. & Zhu, F. ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies. Briefings in bioinformatics 21(2): 621-636 (2020) (IF=13.994).
2019
张莉娟, 尹华春, 李勃 & 陈斌. 10种昆虫过氧化氢酶基因的全基因组鉴定与特征预测. 重庆师范大学学报(自然科学版) 36(03): 36-43+32 (2019).
李勃, 倪雅诗 & 陶靖心. “生物信息学”课程在线教学资源库的设计与构建——以重庆师范大学为例. 无线互联科技 16(22): 95-96 (2019) (第一作者).
Zuo, X., Li, B., Zhu, C., Yan, Z. W., Li, M., Wang, X. & Zhang, Y. J. Stoichiogenomics reveal oxygen usage bias, key proteins and pathways associated with stomach cancer. Scientific reports 9(1): 11344 (2019) (IF=4.379).
Yin, Y., Li, B., Mou, K., Khan, M. T., Kaushik, A. C., Wei, D. & Zhang, Y. J. Stoichioproteomics reveal oxygen usage bias, key proteins and pathways in glioma. BMC medical genomics 12(1): 125 (2019) (IF=3.063, Co-first author).
Yang, Q. X., Wang, Y. X., Li, F. C., Zhang, S., Luo, Y. C., Li, Y., Tang, J., Li, B., Chen, Y. Z., Xue, W. W. & Zhu, F. Identification of the gene signature reflecting schizophrenia’s etiology by constructing artificial intelligence-based method of enhanced reproducibility. CNS neuroscience & therapeutics 25(9): 1054-1063 (2019) (IF=5.243).
Yang, Q., Wang, Y., Zhang, S., Tang, J., Li, F., Yin, J., Li, Y., Fu, J., Li, B., Luo, Y., Xue, W. & Zhu, F. Biomarker Discovery for Immunotherapy of Pituitary Adenomas: Enhanced Robustness and Prediction Ability by Modern Computational Tools. International journal of molecular sciences 20(1) (2019) (IF=6.208).
Tang, J., Fu, J., Wang, Y., Luo, Y., Yang, Q., Li, B., Tu, G., Hong, J., Cui, X., Chen, Y., Yao, L., Xue, W. & Zhu, F. Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains. Molecular & cellular proteomics : MCP 18(8): 1683-1699 (2019) (IF=7.381).
Nie, X., Wei, J., Hao, Y., Tao, J., Li, Y., Liu, M., Xu, B. & Li, B. Consistent Biomarkers and Related Pathogenesis Underlying Asthma Revealed by Systems Biology Approach. International journal of molecular sciences 20(16) (2019) (IF=6.208, Corresponding author).
Li, X., Li, X., Li, Y., Yu, C., Xue, W., Hu, J., Li, B., Wang, P. & Zhu, F. What Makes Species Productive of Anti-Cancer Drugs? Clues from Drugs’ Species Origin, Druglikeness, Target and Pathway. Anti-cancer agents in medicinal chemistry 19(2): 194-203 (2019) (IF=2.505).
Hu, J., Yin, H., Li, B. & Yang, H. Identification of Transcriptional Metabolic Dysregulation in Subtypes of Pituitary Adenoma by Integrated Bioinformatics Analysis. Diabetes, metabolic syndrome and obesity : targets and therapy 12: 2441-2451 (2019) (IF=3.168, Corresponding author).
Cui, X., Yang, Q., Li, B., Tang, J., Zhang, X., Li, S., Li, F., Hu, J., Lou, Y., Qiu, Y., Xue, W. & Zhu, F. Assessing the Effectiveness of Direct Data Merging Strategy in Long-Term and Large-Scale Pharmacometabonomics. Frontiers in pharmacology 10: 127 (2019) (IF=5.988, Co-first author).
2018
Mei, T., Fu, W. B., Li, B., He, Z. B. & Chen, B. Comparative genomics of chemosensory protein genes (CSPs) in twenty-two mosquito species (Diptera: Culicidae): Identification, characterization, and evolution. PloS one 13(1): e0190412 (2018) [IF=3.240].
Ding, Y. R., Li, B., Zhang, Y. J., Mao, Q. M. & Chen, B. Complete mitogenome of Anopheles sinensis and mitochondrial insertion segments in the nuclear genomes of 19 mosquito species. PloS one 13(9): e0204667 (2018) [IF=3.240].
2017
Yang, F., Fu, T., Zhang, X., Hu, J., Xue, W., Zheng, G., Li, B., Li, Y., Yao, X. & Zhu, F. Comparison of computational model and X-ray crystal structure of human serotonin transporter: potential application for the pharmacology of human monoamine transporters. Molecular Simulation 43(13-16): 1089-1098 (2017) [IF=2.178].
Wang, P., Zhang, X., Fu, T., Li, S., Li, B., Xue, W., Yao, X., Chen, Y. & Zhu, F. Differentiating Physicochemical Properties between Addictive and Nonaddictive ADHD Drugs Revealed by Molecular Dynamics Simulation Studies. ACS chemical neuroscience 8(6): 1416-1428 (2017) [IF=4.418].
Bo Li, Jing Tang, Qingxia Yang, et al. NOREVA: normalization and evaluation of MS-based metabolomics data. Nucleic Acids Research, 2017, W1: 162-170. (IF=19.6)
2016
Zheng, G., Xue, W., Wang, P., Yang, F., Li, B., Li, X., Li, Y., Yao, X. & Zhu, F. Exploring the Inhibitory Mechanism of Approved Selective Norepinephrine Reuptake Inhibitors and Reboxetine Enantiomers by Molecular Dynamics Study. Scientific reports 6: 26883 (2016) (IF=4.379).
Xue, W., Wang, P., Li, B., Li, Y., Xu, X., Yang, F., Yao, X., Chen, Y. Z., Xu, F. & Zhu, F. Identification of the inhibitory mechanism of FDA approved selective serotonin reuptake inhibitors: an insight from molecular dynamics simulation study. Physical chemistry chemical physics: PCCP 18(4): 3260-3271 (2016) (IF=3.676).
Li, B., Tang, J., Yang, Q., Cui, X., Li, S., Chen, S., Cao, Q., Xue, W., Chen, N. & Zhu, F. Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis. Scientific reports 6: 38881 (2016) (IF=4.379, First author).
Pre-2016
Jing, Y., \(Li, B.^+\), Chen, N., Li, X., Hu, J. & Zhu, F. The discrimination of learning styles by Bayes-based statistics: An extended study on ILS system. Control and Intelligent Systems 43(2): 68-75 (2015) (EI, Co-first author).
Jia, X., Liu, S., Zheng, H., Li, B., Qi, Q., Wei, L., Zhao, T., He, J. & Sun, J. Non-uniqueness of factors constraint on the codon usage in Bombyx mori. BMC genomics 16(1): 356 (2015) (IF=3.969).
高山, 张宁, 李勃, 徐硕, 叶彦波 & 阮吉寿. 下一代测序中ChIP-seq数据的处理与分析. 遗传 34(06): 773-783 (2012).
陈园园, 李勃 & 邓林红. 基于强迫振荡技术的呼吸道阻力及其可变性测量. 医用生物力学 27(04): 460-463 (2012).
Long, J., Li, M., Ren, Q., Zhang, C., Fan, J., Duan, Y., Chen, J., Li, B. & Deng, L. Phylogenetic and molecular evolution of the ADAM (A Disintegrin And Metalloprotease) gene family from Xenopus tropicalis, to Mus musculus, Rattus norvegicus, and Homo sapiens. Gene 507(1): 36-43 (2012) (IF=3.688).
李勃, 熊海燕, 陈红星 & 邓继先. 猪血清白蛋白基因5′端调控区的克隆与分析. 广西师范大学学报(自然科学版) 27(03): 58-61 (2009) (中文核心, 第一作者).